Haruko Obokata said she was dismayed that new laboratory tests have not been able to repeat her experiments, which she had claimed showed the successful conversion of an adult cell into a stem cell-like state.
"I am keenly aware of my responsibility for troubling a number of people because of my inexperience," Obokata said in a statement.
"I even can't find the words for an apology," said Obokata, who has avoided media exposure since her last news conference in April.
"We have conducted verification experiments but can't repeat the STAP phenomenon," team leader Shinichi Aizawa told a nationally broadcast news conference.
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"As a result, we will terminate the verification experiments," he said, cutting short verification tests that had been originally scheduled to last until March.
Riken in January trumpeted Obokata's simple method to re-programme adult cells to work like stem cells -- precursors that are capable of developing into any other cell in the human body.
The study was top news in Japan, where the photogenic and Harvard-trained Obokata became a phenomenon.
Journalists were beguiled by eccentricities that included her insistence on wearing a housewife's apron in the laboratory, instead of a white coat.
But media attention soon grew into scepticism as doubts emerged about her papers on Stimulus-Triggered Acquisition of Pluripotency (STAP).
Mistakes were discovered in some data published in two papers, photograph captions were found to be misleading, and the work itself could not be repeated by other scientists, leading to accusations the data had been doctored.
But her experiments were carried out under strict video surveillance while inspectors monitored test procedures.