"Batting down the order is one of the toughest things to do especially on wickets like these. There will be pressure to rotate, to get a partnership. It's not easy. You don't always get a player who's complete and bats at no 5, 6 or 7," Dhoni said in the post-match news conference.
Lower down the order, Axar Patel (38) and Amit Mishra (14) had revived India's hope but before they could convert it into a match-winning partnership the latter was run out.
Asking for more patience to be shown with the inexperienced middle-order, Dhoni said: "Batting down the order on wickets like this when you're chasing is always going to be tough. You will have to give them time. They will find their way. After they get more and more games like this they will figure out what suits best for them to chase a total.
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"When you have partnerships going a lot of stuff becomes easier. If you lose wickets at that point of time, it adds to the pressure. Bowlers tend to bowl in right areas and becomes difficult," he added.
With this win, New Zealand levelled the five-match series 2-2 and now head to Visakhapatnam for the final one-dayer on Saturday.
Asked whether India were heavily reliant on Kohli, Dhoni said: "It's not like that. The stats don't exactly reflect the exact scenario."
India have not won a bilateral series since November 2014, if one discounts the two clean sweeps against Zimbabwe in July 2015 and June 2016.
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