State Home Minister Ramesh Chennithala said the decision to initiate further probe was taken after the Crime Branch examined the revelations made recently on the Swami's death and was convinced that the case qualified for further investigation.
A report was submitted to this government in this regard, he told a press conference at Alappuzha.
"Government is convinced that there are new revelations on the issue," he said.
The ordering of further probe just ahead of November 2 civic polls assumes political significance as it comes in the wake of BJP striving to get the support of Sree Narayana Dharma Paripalana Yogam, an organisation of backward Ezhava community headed by Natesan, to form a third Front in the state.
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Chennithala said further probe has been ordered under CrPc 173(3) in view of the fresh revelations on the death of the Swami, former head of Sivagiri Mutt, who was found drowned in the Periyar river at Aluva in July 2002.
The issue had evoked heated debate in the state with demand for a fresh probe coming from different quarters including from Swami Prakashananda, the present head of Varkala-based Sivagiri mutt, founded by eminent social reformer Sree Narayana Guru.
As per the government decision, Crime Branch ADGP Ananthakrishnan would supervise the probe to be carried out by a special team headed by Ernakulam Superintendent P K Madhu.
Natesan, who had rejected the allegations and recently announced decision to form a new political party in the state, welcomed the government decision for further probe.