Amritsar girl Khushbir, who was representing ONGC, wanted to take part in the early morning event against the wishes of Russian coach Artsybashev who, according to Athletics Federation of India sources, did not want her to take part on the ground that she could get injured.
She took part and was leading the race by a big distance before pulling out after covering around nine kilometers.
Artsybashev was even seen shouting at Khushbir Kaur before the start of the event following an argument with national chief coach Bahadur Singh.
"You cannot treat an athlete like that," Bahadur was heard telling the Russian.
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Another official said that since the National Open was an event competed by departments of the governments, the athletes also have a duty to take part.
"These departments are spending money for the athletes and so they also want them to represent in these national events. The athletes also would want to do something for their employers," the official said.
ONGC Games and Sports Cordinator Bhupinder Singh told PTI that he will have to find out why Khushbir pulled out.
"We have come to know that she pulled out midway into the competition. We are going to ask her and her coach why she pulled out," Bhupinder said.