As the House passed a resolution, the opposition members staged a walkout in protest against the move.
The day-long session saw many legislators taking part in a discussion on Baijal's recent message to the Assembly.
The committee has eight AAP MLAs and one BJP MLA -- Jagdish Pradhan -- as its members.
Responding to the discussion, Sisodia said the House committees had only been fixing the accountability of officers, and alleged that the "BJP does not believe in democracy" and support the executive, sidelining the interests of the people.
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"Therefore, the Lt-Governor's message is unconstitutional and it is also in violation of the SC order," the deputy chief minister said.
He said the department-related standing committees were just ensuring that the people did not have to face any problem, by fixing the accountability of officers.
Hitting out at Leader of Opposition Vijender Gupta for alleging that the House committees have more power than the Lok Sabha committees, he said, "Law is not above the country and its people. In democracy, there is a system to fix the responsibility of the executive."
"We (ministers) will also appear before the committees of the House if we were summoned by them," he also said.
The resolution passed by the Assembly states that the nine-member committee will look into judiciousness of the Lieutenant Governor's concerns regarding functioning of the standing committees and examine unconstitutionality of Baijal's message.
BJP leader Gupta claimed that the House committees were enjoying unlimited powers which even the Lok Sabha committees lacked.
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