The Army has launched an investigation into the incident, they added.
"The major was not present at the site of the incident. He was around 200 metres away from it... He was in the vicinity of the spot," a source said.
Two civilians were killed when Army personnel fired at a stone-pelting mob in Shopian on Saturday, triggering protests and prompting Chief Minister Mehbooba Mufti to order an inquiry into the incident.
J-K Police chief S P Vaid said yesterday that registration of the FIR in the Shopian incident is just the beginning of the investigation and the Army's version would be taken into account as well.
More From This Section
A defence spokesman on Sunday had said in Srinagar that the troops opened fire when a mob tried to lynch a junior commissioned officer and snatch his service weapon.
"The crowd surrounded an isolated portion of the convoy consisting of four vehicles," he said, noting that the stone- pelters caused extensive damage to these vehicles and tried to set them on fire.