The MHA, in an affidavit before Justice V P Vaish charged Greenpeace with violating Foreign Contribution Regulation Act (FCRA) by merging its foreign donations with domestic contributions.
Holding that Greenpeace have not come before the court with clean hands, the ministry said they were "continuing to use their FCRA accounts despite suspension of the same on April 9, 2015".
"The suspension order mention about acts and omissions on the part of Greenpeace regarding violations of provisions of FCRA 2010 and Foreign Contribution (Regulation) Rules (FCRR) 2011 and a reasonable opportunity was also given to them," the MHA said in their affidavit.
The affidavit has been filed in a plea moved by the NGO challenging suspension of its FCRA registration and freezing of its foreign and domestic contribution accounts.
The court had on May 27 allowed Greenpeace to use two of its accounts for the purpose of receiving and utilising fresh domestic donations for its day-to-day functioning. The Ministry had on April 9 this year suspended the NGO's registration under FCRA for 180 days.