Members of the military showed up at the presidential offices this afternoon and barred the transitional leaders from leaving, Achille Tapsoba, who works at the presidency, told The Associated Press.
Interim President Michel Kafando and Prime Minister Lt. Col. Yacouba Isaac Zida were tasked with organizing the October 11 presidential election, which many hoped would strengthen the country's democracy.
There have been tensions over the vote because members of the ex-president's party have been declared ineligible. Anyone who supported the ex-president's bid to amend the constitution so he could seek another term also is banned from running.
He had threatened to disband the group back in December but later reversed course.
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Burkina Faso's military initially had picked Zida to lead the country when it swooped in and took control in the power vacuum after President Blaise Compaore's resignation. The international community urged the military to swiftly hand back power or face crippling economic sanctions.
Kafando, a former ambassador to the UN, was then chosen as transitional president, and he tapped Zida to serve as prime minister.