After their nearly two-hour long meeting, Modi, while addressing a joint media event with the Canadian prime minister, said they discussed the entire gamut of the bilateral partnership.
Asserting that it is important that the two countries work together to fight terrorism, Modi said there should be no place for those who misuse religion for political goals.
The prime minister also made it clear that those who challenge India's sovereignty and unity will not be tolerated.
Observing that Trudeau has visited various parts of India in last few days, Modi said the Canadian leader must have experienced the diversity of the country.
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On his part, Trudeau described India as a natural partner for commercial cooperation.
Earlier, External Affairs Minister Sushma Swaraj called on the Canadian prime minister and discussed various issues of mutual interest.
Swaraj had a warm meeting with Trudeau and discussed ways to strengthen and deepen the partnership between the two countries, Ministry of External Affairs (MEA) Spokesperson Raveesh Kumar tweeted.