According to MCA rules, only a resident of Mumbai can become a governing member of the cricket body and Munde now has two days' time to appeal to the Association.
Yesterday was the last day for filing the nominations and today the forms were scrutinised.
"His application was rejected as the address on his electoral registration was Beed. He can appeal before October 15," MCA joint secretary Nitin Dalal told PTI.
Pawar was disqualified from contesting the elections in 2011, since he was listed as a resident of Baramati and not Mumbai.
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The NCP chief had changed his address this year in the electoral registration to comply with the MCA norms.
A local club, Stylo Cricket Club from Mazgaon, had forwarded Munde's name to MCA last month saying the former Deputy Chief Minister of Maharashtra would represent it at the election.
According to rules, a candidate needs representation of an MCA-affiliated club to contest polls.