"It is a deliberate attempt of witchhunt to suppress Muslims and Islamic institutions in India.
"This vicious campaign against a peaceful Muslim scholar is actually vindicating our point of view that Muslims in India are no longer safe and secured," the Jammu Kashmir Liberation Front chairman claimed.
Groups of youth took to the streets at Press Colony and Khanyar here in support of Naik, said officials, adding that the protesters, however, dispersed peacefully.
Police and paramilitary forces had to fire teargas shells and use batons to disperse the protesters, they added.
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There was no report of any casualty though the clashes were continuing when last reports came in, they said.
A big group of youths indulged in stonepelting on securitymen at Muran Chowk in Pulwama district of south Kashmir against the alleged desecration by security forces of a local graveyard reserved for slain militants, said officials, adding that no one was hurt in the clashes so far.
Stonepelting protests by "pro-separatist" youth after the Friday prayers have been a common phenomenon at various parts of the valley, especially downtown Srinagar, for some time now.