Ministry had not named any athlete but it was clear that the reference was to tennis players who skipped the Incheon Asian Games to play on ATP tour to salvage their rankings.
Paes said he was not aware of the whole story so he cannot comment much but his patriotism is beyond doubt.
"It's very clear to see, I love playing for the flag and the people. When I play at Grand Slams, I play for India, for flag and for people," the 41-year-old player said.
Paes, who has been a hero of India's many memorable Davis Cup victories, said "At the end of the day, I have to do my job and earn my living and I am focussed on my job, winning more Grand Slams. I have done my bit in the last 24 years not just for myself but also for the people," he said.
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Paes also clarified that he has not received any financial aid from the government since 2012 London Olympics.
He concluded by saying that playing for the country was a "great joy for an athlete".
AITA had backed the tennis players, saying their commitment should not be questioned.