"We are not inclined to entertain your writ petition. It is better you withdraw it and approach the income tax assessing officer," a bench of Justices S Muralidhar and Chander Shekhar said.
It also said that the company has not moved the assessing officer raising its grievances, so it should first approach the IT department and submit its documents.
In case it is still not satisfied, the company can move the court thereafter, the bench added.
Young Indian (YI) had approached the high court seeking a direction to stay the IT proceedings and quashing of re- assessment notices issued against it with regard to the National Herald misappropriation of assets case. The company was issued notices regarding the assessment year 2011-12.
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The counsel for the Income Tax Department opposed the petition, saying the firm has not moved the assessing officer and hence its plea was not maintainable.
The Gandhis and other accused -- Motilal Vora, Oscar Fernandes, Suman Dubey and Sam Pitroda -- have denied the allegations levelled against them.
The trial court had summoned them as accused persons, besides Young India on June 26, 2014.
On December 7, 2015 the high court had rejected their pleas for quashing the summons issued against them by the trial court in the case.
The Congress President and the Vice President, Vora (AICC treasurer), Fernandes (AICC general secretary), Dubey and Pitroda were summoned for the alleged offences of dishonest misappropriation of property, criminal breach of trust and cheating read with criminal conspiracy of the IPC.
The IT department's move to issue notices followed its probe on Swamy's complaint alleging that the Gandhis had misappropriated AJL's assets while transferring their shares to the newly formed Young India.