Mark McLeod, who for many years has been NZC's voice of choice for home matches against touring sides, had played a cash register sound effect during one of Aamir's spells during the match at Westpac Stadium.
NZC CEO David White said he has since apologised to the Pakistan team, and has now publicly reprimanded McLeod.
The 23-year-old youngster is playing in his first international tour since serving his suspension and jail term for his role in the 2010 spot-fixing saga.
"I've contacted the Pakistan team management to apologise, and to assure them there will be no repeat."
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Aamir's return to the national and international scene has seen a mixed response from the players and spectators with a few supporting him, while some publicly showing their disapproval.
Things might have been sorted between Mohammad Hafeez, Azhar Ali and Aamir through a PCB intervention after the senior players refused to play with the tainted cricketer, but spectators continue to be expressive about their stand on the pacer's return.
There were also reports of Kiwi fans waving cash at Aamir while he was near the boundary rope during Monday's one-day international at the Basin Reserve - also in Wellington - and yelling, "I've got a dollar for you".
However White wasn't as apologetic about the behaviour of fans at the Basin Reserve.
"As opposed to a member of the public in the stands having a bit of banter and humour ... It's different," White said. "We can't direct people how to behave all the time.