Fadnavis said the "minute details" will be gone into before an inquiry is ordered.
"Panjaka Munde had called me up to say that in this regard if I feel the need for any inquiry to be ordered, I should do it. I am personally monitoring this case. What can be seen prima facie is that there are no discrepancies," he told reporters after meeting Prime Minister Narendra Modi.
He also said the norm of inviting e-tenders for purchases worth Rs three lakh and more was introduced by his government in April. Congress has accused Pankaja of flouting this norm by clearing purchases through Government Resolutions.
The Fadnavis government was yesterday hit by first major charge of corruption after Congress accused Pankaja, daughter of BJP stalwart late Gopinath Munde, of clearing purchases worth Rs 206 crore on February 13 through 24 Government Resolutions.
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Fadnavis, however, made it clear that a probe will be ordered only if irregularities were found to have been committed after a thorough examination.
"We will still go into the minute details and, if any discrepancy is found then, an Inquiry will be ordered," he said.
Congress leader Sachin Sawant had filed a complaint with the Anti-Corruption Bureau on the issue and former Chief Minister Prithviraj Chavan had even sought a CBI probe.