"Your (ED's) application is allowed," said Special Judge P R Bhavake while issuing the NBW.
ED had moved the special court last week seeking NBW against Modi after he did not respond to summons sent to him.
According to ED sources, this warrant will be sent to the Ministry of External Affairs which in turn will be sending it to the United Kingdom. Lalit Modi left the country shortly after the ED began its probe against him in 2009.
The court also wanted to know why the agency was not arresting him and had sought the NBW, and whether a warrant can be issued during the investigation.
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Last month, the court had issued Letters Rogatory (LR) to Singapore and Mauritius, seeking assistance in the case.
BCCI had registered an FIR in Chennai against Lalit Modi in 2010 under the IPC with regard to a deal between MSM Singapore (which owns the channel Sony) and WSG media, a sports marketing and event management company.
In 2009, the ED started a probe under the Foreign Exchange Management Act (FEMA) to investigate allegations that payment of Rs 425 crore facilitation fees by MSM Singapore to WSG Mauritius was made in an unauthorised manner.
Yesterday, ED's lawyer Hiten Venegoankar said that since Lalit Modi was not available in India, hence an NBW should be issued. Modi had not complied with the summonses issued to him since 2009, he had claimed.
The ED lawyer said the case was at the stage of pre-investigation and the Supreme Court had said in a previous ruling that NBW can be issued during investigation.