The executions take the number of those hanged until death to nine after Pakistan lifted its self-imposed moratorium on capital punishment following the Peshawar school carnage last month that killed 150 people, mostly children.
Ahmed Ali alias Sheshnag and Ghulam Shabbir alias Fauji alias doctor belonged to a banned organisation and were hanged this morning in the central jail of Multan.
Dawn reported that Ahmed Ali, a resident of Shorkot, Jhang district, was hanged for killing three men in 1998.
The warrants were issued by anti-terrorism courts as mercy petitions of the convicts had been rejected by the President.
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Pakistan ended its six-years-old moratorium on the death penalty in terror cases last month after the horrific terror attack on an army-run school in Peshawar.
Following the removal of moratorium, President Mamnoon Hussain has turned town mercy appeals of 17 convicts for death penalty.
Six of those executed were found guilty of trying to assassinate then-military dictator Pervez Musharraf in 2003 and the seventh was sentenced in connection with a 2009 attack on the army headquarters.
About 8,000 death row prisoners are in the line of execution in Pakistan.