Pawar's remarks came as he questioned Modi's development model and his claim to change the face of the country.
"Chief Minister of neighbouring state speaks about his development agenda....What is development?..It is bringing all round development in the lives of the poor and bringing smile on their faces," the Union Agriculture Minister said.
"They speak of changing face of the country...But the entire country has seen how mass murders took place," Pawar said in a reference to the 2002 post-Godhra riots.
Responding to a query during a press conference in Kolhapur, the NCP chief had said, "If courts have given their verdict, then the question of holding a debate on it does not arise. We accept the court's order and there won't be any debate on it."
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There was also reports about Pawar meeting Modi but the NCP leader had denied it.
Pawar today alleged that the Gujarat Chief Minister had ignored certain sections of society in his quest for power.
Pawar's NCP is an important constituent of the Congress-led UPA at Centre and also an alliance partner in the Democratic Front government in Maharashtra.
The Maratha strongman also criticised former Mumbai police commissioner Satyapal Singh for quitting the IPS to join BJP.