The fallout came after Whatmore took offence to remarks made by Ajmal during a television show where he was asked about the difference between local and foreign coaches.
"Just read Ajmal's quotes. Deeply upset and hurt by his remarks. Just when you think you know someone!!" Whatmore tweeted yesterday evening.
Ajmal had on Tuesday night said that he didn't see much difference between local and foreign caoches except for the better money paid to foreigners.
"Ajmal had fallen prey to some tricky questions in the media. PCB advised Saeed Ajmal to meet Dav Whatmore and apologise to him for hurting his sentiments. Saeed apologised to Dav saying 'people who know me understand that I mean no harm to anyone and that is why as soon as I came to know of this unfortunate media story, I went up to Dav and apologised," the release said.
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Whatmore then tweeted that Ajmal had come to meet him and apologised.
The PCB also tried to pacify Whatmore in its release saying it valued his contribution to Pakistan cricket.
"Dav has worked tirelessly with the Pakistan team and it would be extremely unfair not to recognise his services. I enjoy very good relations with Dav and I am hopeful of continuing this in the coming series," the release quoted Ajmal as saying.
Ajmal, in his remarks on the channel, had said there is no difference between a local and foreign coach with reference to Whatmore.