"What is important, and this is something where there is complete agreement with the Finance Minister and me, is that what is functioning well doesn't need to be disrupted for some hypothetical gains," Rajan told reporters after the second bi-monthly policy announcement.
"There is a broad agenda of moving other things away from the RBI and I think we have agreed that would not be wise without deeper dialogue," he added.
After dropping the provisions, Jaitley had said that the government would discuss the issues in detail with RBI and then move with the changes.
According to some experts, there is a conflict of interest with the RBI acting as both the investment banker managing the nation's liabilities as well as handling the monetary policy.
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He said the RBI regulates only the over-the-counter short-term money market instruments like government bonds, options and the currency and there is a "stronger link" between those and the monetary policy.
"It is important to consider these things, how those things are regulated, who regulates them and where they (would) lie," Rajan said, pointing out that Sebi already regulates exchange traded bonds and there is a "miss-apprehension that it is somehow not being regulated by Sebi.