The 78-year-old pontiff delivered about two dozen speeches and said several masses during a week long trip to Ecuador, Bolivia and Paraguay.
"You would like to say that I take drugs!" he said in jest, speaking in the plane flying him back to Rome from Asuncion, Paraguay's capital.
"Mate is what helps me," he said, referring to a traditional caffeine-infused beverage popular in the pope's native land Argentina.
Coca is native to western South America and is known throughout the world for its psychoactive alkaloid cocaine. Chewing the leaves or drinking coca tea does not produce the intense high people experience with cocaine.
The pope's visit, his ninth trip abroad, has been notable for a number of historical pronouncements.
The pontiff decried the scourge of corruption as the "gangrene of a people," railed against ideologies, called for an end to poverty and lamented today's consumerist society.