On his arrival at the shrine, the President was accorded traditional reception by Tirumala Tirupati Devassthanams (TTD), which manages the temple.
Andhra Pradesh Chief Minister N Chandrababu Naidu and Governor E S L Narasimhan were also with the President on the occasion.
After offering worship, Mukherjee was presented with a sacred silk cloth, laddu prasadam and celestial water by the TTD, while priests recited Vedic hymns, TTD Chairman Chadalavada Krishnamurthy told PTI.
Before visiting the hill shrine, the President inaugurated a newly built multi-crore TTD Veda Patasala (Vedic school) in Ai Bheemavaram, about 550 KM from here in Andhra Pradesh, he said.