The two AAP leaders apprised the President of the work being done by their government.
"The President today hosted lunch for Delhi Chief Minister Arvind Kejriwal and Deputy CM Manish Sisodia at Rashtrapati Bhavan here," a statement said.
Kejriwal has met the President on several occasions after coming to power last year.
In February this year, he had called on Mukherjee along with his Delhi Cabinet colleagues to discuss the law and order situation in the national capital following the arrest of JNUSU president Kanhaiya Kumar on sedition charges.