The President was received by the Governor of Ankara at the airport as he arrived here on the last leg of his two-nation tour.
Before landing here, he visited the Goreme open air museum at Cappadocia after the entourage flew from in Istanbul.
The museum is a vast monastic complex comprising scores of refectory monasteries juxtaposed, each with its own fantastic church. The site also presents a unique example of rock hewn architecture and fresco technique.
The Governor of Cappadocia later hosted Mukherjee for lunch.
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Indian Ambassador Sushmita Ganguly Thomas alongwith the local diaspora will host the Presidential entourage for dinner tonight.
The President will be in Turkey till tomorrow and will attend a host of events. He is in the country on an invitation by the President of Turkey.
This is the third visit by an Indian President to Turkey after the visits by the President of India in 1993 and 1998.
Earlier, Mukherjee had visited Belgium where he attended a series of state events including the 'Europalia-India 2013-14', a cultural extravaganza showcasing India.