The event saw veteran trap shooter Manavjeet Singh Sandhu equalling the Asian record of 124/125 target in the preliminary stages and winning the bronze medal in the seniors category.
Besides the two gold, India won as many silver and three bronze medals.
Manavaditya won the medal with a qualification score of 110/125 in junior trap event.
"I am impressed and proud that Manav at this very young age is taking on the big guns, he understands that age cannot be a barrier for talent. I can sense the great potential in him. I am equally proud of all juniors and my congrats to the seniors for their able leadership," Rathore senior said.
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Manavjeet also won the gold medal in the 4th Union Championship (Grand Prix) which was held concurrently with the 3rd Asian Shotgun Championship, thereby winning a prize money of USD 5000.
In women's trap event, Seema Tomar reached the individual finals with a score of 70/75 and finished fourth.
G S Sharan, a junior trap shooter, won the silver medal with the qualification score of 119/125.
Seema Tomar (70), Shagun Chowdhary (66) and Shreyasi Singh (64) teamed up to clinch the trap senior women's team silver after aggregating 200/225.
In skeet junior, the team of Anantjeet Singh Naruka (113), Angadvir Singh Bajwa (112) and Hamza Sheikh (107) bagged a bronze with a total score of 332/375.