The United States military was set to join Japanese rescuers on Sunday racing against the threat of more landslides to reach people still trapped by two big earthquakes.
At least 41 people are known to have died in the double disaster, with up to eight still missing — feared buried in shattered houses or under torrents of mud.
Rain hit the area around Kumamoto overnight, where officials have warned quake-loosened hillsides could be at risk of collapse as aftershocks continued to roil the ground.
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The weather brought further misery to those who survived Thursday's initial quake and the bigger, more powerful tremor that hit early Saturday.
Tens of thousands of people spent the night in temporary accommodation, or huddled in makeshift shelters.
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In the badly-affected town of Mashiki, few of the traditional style wooden houses remained intact, and their occupants described the hardships of surviving amid the destruction.
"I sleep in a car and stay in this tent during the day," Seiya Takamori, 52, told AFP, gesturing to a shelter made from a blue plastic sheet. "In this area, we all knew there was an active fault running underneath the town of Mashiki, but no one really cared about it. We always said to each other that a big quake would hit at some point, but didn't really take it seriously."
Neighbour Masanori Masuda, 59, said many houses were in reasonable shape after the first tremor, but had suffered badly when the second quake struck, leaving occupants without basic necessities.
"I need batteries to charge my mobile phone. Also, I need a toilet. I am afraid of going into the battered house, but I cannot help it. I take a bucket of water with me and have to use the toilet in the house," he said.
The two quakes triggered enormous landslides that swept away homes, roads and railway lines, and caused even modern buildings to crumble.
More than 90,000 people have been evacuated, including 300 from an area near a dam thought to be at risk of collapse.
Isolated villages in mountainous areas were completely cut off by landslides and damage to roads. At least 500 people were believed trapped in one settlement, accessible only by helicopter.
Aerial footage showed a bridge on a main trunk road had crashed onto the carriageway below, its pillars felled by the huge seismic jolt.
The government had said Saturday that there were "multiple locations where people have been buried alive", and reports suggested scores were missing, but the number was sharply down by this morning.
Around 25,000 troops, firefighters, medics and other rescue personnel were to be joined by members of the United States military, Prime Minister Shinzo Abe said.
"Our defence minister informed me that the US military said aerial transportation is available. We are grateful for the offer," he said. The US has almost 50,000 servicemen and women stationed in Japan.