Although he failed to inspire England to success at the World Cup, it was still a memorable 12 months for the Manchester United striker.
The 29-year-old scored eight goals in 13 appearances and was named England skipper following Steven Gerrard's retirement from international football.
Rooney also moved to within three goals of Bobby Charlton's all-time scoring record.
Rooney took 27 per cent of the votes from an online poll of supporters club members, more than second-placed Danny Welbeck (11 per cent) and third-placed Raheem Sterling (seven per cent) combined.
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"The fact that this award is chosen by the fans makes it even more special, so I would like to thank all those who voted.
"I would also like to thank all the England fans for their support throughout what was a mixed year.
"Receiving an honour such as this from the fans is always something that fills you with personal pride."
West Bromwich Albion forward Saido Berahino won England's Under-21 player of the year.