Throwing his weight behind the students, Salman said Chauhan should pay heed to the protests.
"I think that he (Chauhan) should listen to the students ...Because the students have made our industry, worthy industry...," Salman told reporters in Mumbai.
"If students don't want him why should he be there?," said Salman's father Salim Khan while director Kabir Khan said government should not "intrude" and the institute should be given power for such appointments.
The students, however, said they will not be deterred by the warning and will continue their strike which started on June 12, till the government responds to their demands.
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"We expected a more sensitive handling of the issue by the government which has not responded to our repeated communications, calling for a fresh round of talks to sort out the matters that concern us," FTII Students Association (FSA) representative Vikas Urs told mediapersons in Pune.
"I have to abide by the Government of India... I am not the deciding factor. I have been appointed by the Government of India... It is for the Government to decide whatever will be the course of action in future," he said. When asked about Salman's remarks, Chauhan said they were friends and he respected their opinion.
The students are protesting against the appointment of Chauhan, a BJP member, lacks "vision and stature" to head a prestigious institute like FTII.
Well-known celebrities like Rishi Kapoor, son Ranbir Kapoor, Nawazuddin Siddiqui, Anupam Kher, filmmakers Kundan Shah, Aziz Mirza, Adoor Gopalakrishnan, Kiran Rao, Rajkummar Rao, Sudhir Mishra, Sayeed Mirza, Resul Pookutty, Amol Palekar and Piyush Mishra have come out in the support of students.
Cinematographer Santhosh Sivan, actress Pallavi Joshi and National Award-winning filmmaker Jahnu Barua resigned as members of the FTII Society in support of the striking students.