A bench headed by Justice H L Dattu granted time after the agency submitted that all the states have not provided information regarding NGOs and it needs more time to compile the details.
Meanwhile, the agency submitted that most of the NGOs are not filing IT returns.
It said that Gujarat and Tamil Nadu have not given information about the NGOs working in their states and Andhra Pradesh, Bihar , Haryana, Madhya Pradesh, West Bengal, Odisha and Maharastra provided only partial inputs.
The apex court had expanded the scope of the PIL which was filed in 2011 against an NGO, Hind Swaraj Trust, run by anti-corruption crusader Anna Hazare.
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In September, it had directed the agency to file within six weeks the names of all the registered NGOs and to indicate in its affidavit as to whether they have filed their balance sheets including income-expenditure statements before the authority before whom they are registered.
"If CBI can probe murder cases then why not probe against NGOs? You can do so many things, you do it also," the bench had said.