"The UGC regulation says a person should have 10 years of teaching experience. How does it affect the minority rights of the university," a bench comprising Chief Justice J S Khehar and Justice D Y Chandrachud asked.
The bench also sought to know about the provisions of the Aligarh Muslim University Act which have been violated by the UGC regulations.
Ahmad claimed that the UGC regulations were not applicable to the AMU as it is a minority institution and moreover, Article 31 of the Constitution gave independence to minority-run institutions to look after their own affairs.
Earlier, the apex court had taken exception to the AMU's
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submission that an eminent person can be appointed its Vice Chancellor, saying did it mean that "a singer, a sportsman or a musician" can also be selected for the coveted assignment.
The Ministry of Human Resource Development had said the names were forwarded to the President under the relevant provisions of the Aligarh Muslim University Act.
The President appointed one of the short-listed persons as the VC, the ministry said, adding the varsity is yet to adopt the UGC regulations.
The reply of the HRD Ministry was filed in response to a plea of an alumni of the university seeking a direction to quash appointment of Lt Gen (Retd) Zameeruddin Shah as the VC.
Shah's appointment as the VC of AMU on May 11, 2012 was challenged on the ground that according to the UGC regulations, the VC ought to have worked for at least 10 years as a professor in a university or on an equivalent post in a research or academic institute.
The ministry had said that the UGC regulations on Minimum Qualifications for Appointment of Teachers and Other Academic Staff in Universities and Colleges and Measures for Maintenance of Standards in Higher Education, 2010 are mandatory for central universities.
"All the central universities should adopt these regulations without fail and as early as possible in order to ensure maintenance of standards in higher education," it had said.