The project, to be formally launched by Chief Minister Oommen Chandy, aims at connecting various backwater destinations in the state.
The Seaplane was given a 'water salute' as it touched down at the Kochi International airport at nearby Nedumbassery.
Tourism minister A P Anil Kumar accompanied by State Planning Board Vice Chairman K M Chandrasekhar and Tourism Secretary Suman Billa, received the aircraft piloted by Captain Michael Fabry.
Allaying apprehensions that the operation of the seaplane would affect fishing operations and fishery resources, Anil Kumar told reporters that once the service becomes operational all the concerns would disappear.
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Chandrasekhar said the introduction of the seaplane in Kerala marked a new chapter in the country's civil aviation sector and it would soon encourage other coastal states to follow suit.
Suman Billa said the service would have the four airports of Thiruvananthapuram, Kochi, Kozhikode and Mangalore as base stations and will connect key backwater tourism destinations of Ashtamudi in Kollam, Punnamada in Alappuzha and Bekal in Kasaragod districts.
Besides Kairali Aviation, Kerala Tourism has shortlisted four other companies for operating the seaplane services.
"Once the other agencies begin operations, it will give ample scope for competition in this sector. We expect it to be a very profitable activity, going by the growing number of domestic and overseas tourists reaching the state every year," Billa said.