The employees were on an indefinite strike since November 12 in protest against the state cabinet's decisions of increasing the number of working days in a week from five to six and making biometric registration of attendance mandatory.
The strike has been called off following the high court's order and assurances from the chief minister and various other ministers to reconsider the decisions, Uttarakhand Secretariat Employees Association General Secretary Pradip Papnai said.
Chief Minister Harish Rawat expressed happiness over the strike being called off.
Describing secretariat employees as part of the government, he said resolving their problems was the state government's topmost priority.
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"The government is always ready to listen to its officials and employees. There is no better option than dialogue. Government is always ready to fulfill the appropriate demands of its employees," Rawat said in a statement.
"Leaders of employees have shown their leadership quality by rolling back the strike as they respected the verdict of honourable High Court as well as people of the state who had been inconvenienced by the strike, " he added.