In October, a columnist for Dawn newspaper wrote a front-page story about a rift between civilian and military leaderships over militant groups that operate from Pakistan but engage in proxy war against India and Afghanistan.
Army resented the "leaked news" item and asked for a probe.
The military had demanded full implementation of recommendations by a committee which probed a story of a meeting in which civilian leaders confronted the military over its alleged reluctance to halt Islamist groups in the country.
However, the situation was apparently brought under control during a meeting between Bajwa and Sharif.
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Geo News reported that meeting was held on Thursday night at the "wish" the prime minister.
It quoted sources that both had a pleasant meeting, adding that matter pertaining to Dawn Leaks, security and border situation were discussed.
"PM Sharif and Chief Of Army Staff Bajwa agreed that the issues surrounding Dawn Leaks would be dealt with amicably," it reported further.
Earlier on Friday, Sharif held a meeting with Interior Minister Chaudhary Nisar Ali Khan, who had last week promised that his ministry will issue a notification based on the recommendations of the Dawn leaks report.
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