"The 100th slot is kept on hold for Shillong. It is yet to submit the proposal. They are busy in the election. It is expected that the city will submit the proposal after the elections," the ministry official said.
Meghalaya goes to poll on February 27.
The number of cities selected under the project stands at 99. Under the scheme, each city will get Rs 500 crore from the Centre for implementing various projects.
The 100 Smart Cities Mission was launched by Prime Minister Narendra Modi on June 25, 2015.
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As on January, 189 projects worth Rs 2,237 crore have been completed, while another 2,948 projects worth Rs 1.38 lakh crore are in various stages of implementation.
Under the mission, the cities proposed to take up various project, including "smart" roads, rejuvenation of water bodies, cycle tracks, walking paths, smart classrooms, skill development centres, upgradation of health facilities and pan city projects like integrated command control centre.
It had kept the slot for the tenth city, Shillong, vacant as it could not submit its proposal on time.