While the new test, dubbed Xpert MTB/RIF, diagnosed tuberculosis (TB) quicker and got people onto treatment sooner, it did not seem to change their long-term prognosis, said the study in The Lancet medical journal.
"Earlier diagnosis by the Xpert test did not reduce overall severity of TB-related illness," study leader Keertan Dheda from the University of Cape Town's department of medicine said in a statement.
Xpert was put to the test in a trial in South Africa, Zimbabwe, Zambia and Tanzania -- countries with high rates of TB -- from April 2011 to March 2012.
Called smear microscopy, this method is often combined with a chest x-ray, and is estimated to miss about 40 to 60 per cent of TB cases.
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On top of this, about 40 per cent of people who do test positive never return to the clinic for their test results and treatment -- hence the need for a faster diagnostic test like Xpert, which can show a result within two hours.
In the southern African trial, 185 of the subjects tested positive in the Xpert test and 182 in the other.
They were examined again at two months and six months after starting treatment, using a scoring system that measured their quality of life and signs and symptoms of TB, said the study authors.
"Despite a longer delay to treatment in the microscopy group, no difference in the severity of TB-related illness, which correlates well with longer term prognosis, was noted after two months and six months between the two groups," the authors said.
"The potential long-term effect of this test is probably overestimated," concluded the study.
The findings would be of major interest to policymakers "because the costs of rolling out Xpert MTB/RIF are very high", Christian Wejse from the public health department of Denmark's Aarhus University wrote in a comment also carried by The Lancet.
Reversing the incidence of TB is one of the UN Millennium Development Goals for 2015, but the disease remains a major cause of illness and death.
Untreated, TB kills about half the people it infects.
Over 95 per cent of TB deaths occur in low- and middle-income countries, and it is among the top three causes of death for women aged 15 to 44.