The meeting took place yesterday at Rajapaksa's official residence, the Temple Trees in Colombo.
Swamy's meeting with Rajapaksa comes amidst the ongoing protests launch in various forms by certain pro-LTTE elements in India against the Sri Lankan government.
Defence Secretary Gotabhaya Rajapaksa and the Secretarty to the Ministry of External Affairs Karunatilaka Amunugama were also present on the occasion.