The toll was expected to rise as Uttarakhand Principal Secretary Rakesh Sharma said casualty figures can be "shockingly high".
Home Minister Sushilkumar Shinde said in Delhi that, "So far, 207 people have lost their lives. But the toll may go up as debris in many areas is yet to be cleared".
50,000 people were still stranded in different inaccessible parts of Uttarakhand, he said.
"40 bodies have been recovered from different points along the Ganga since last evening and taken to the district hospital where each of them is being given a number and an identification tag," Senior Superintendent of Police Haridwar Rajeev Swaroop said.
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An equal number of bodies are likely to be recovered soon from different areas located along the banks of the Ganga in the holy city, Swaroop said.
Citing difficulties in conducting the autopsy of so many bodies with limited facilities available, the official said additional teams of doctors have been requisitioned for the purpose.
Terming it as the "worst tragedy of the millennium", Agriculture Minister Harak Singh Rawat said, "It will take us at least five years to recover from the extensive damages caused to the entire infrastructure network in the Kedarnath area which is the worst affected".
Rawat, who had visited the Kedarnath area, said that he spent five hours there and was shocked to see the extent of the damage caused to the buildings and area adjoining the shrine.