In her petition, A Beema Dowlath said her son Toufeeq Ali was arrested on August 8, 2013 in connection with the murder and the case was then handed over to CB-CID for probe.
She contended that Toufeeq was arrested as police could not nab two other key suspects "police" Fakrudeen and Bilal Malik then.
Noting that Suresh Kumar was not a cadre of any Hindu organization, she claimed that he was murdered owing to an enmity over a temple festival and other personal issues.
Dowlath wanted the court to quash the transfer order and consequently direct the CB-CID to proceed with the case at the judicial magistrate-IV court in Madurai.
Justice V Ramasubramanian directed the government advocate to get instructions by November 5.