"Indian attempt to equate Commander Jadhav's case with civilian prisoners and fishermen is a travesty of logic," the Foreign Office said in a statement here.
The FO remarks came a day after the two countries exchanged a list of prisoners lodged in each other's jails.
According to the list Pakistan shared with India, at least 546 Indian nationals, including nearly 500 fishermen, are languishing in jails in that country.
It said Pakistan remains committed to the implementation of the 2008 Agreement on Consular access, which stipulates the exchange of comprehensive lists of nationals of each country in the other country's jails twice a year on January 1 and July 1.
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Pakistan has implemented the bilateral consular agreement in letter and spirit and is committed to ensuring that humanitarian cases are not held hostage to politics, it added.
The Foreign Office said that five Indian nationals who completed their sentence were repatriated on June 22.
"In contrast, 20 Pakistani civilian prisoners who have completed their sentence still await repatriation, while consular access to 107 Pakistani fishermen and 85 civilian Pakistani prisoners is also pending," it said.
It said that two juvenile Pakistanis - Ali Raza and Babar Ali - who inadvertently crossed the border in July 2016, despite orders of the Indian courts, were repatriated after a year's delay on June 5, 2017.
"Indian humanitarian claims appear contrary to reality in view of the impossible conditions imposed for medical visas for Pakistani patients," it claimed.