Trump fired off a series of tweets in which he said it was a foolish thing to do.
"Sad to see the history and culture of our great country being ripped apart with the removal of our beautiful statues and monuments. You can't change history, but you can learn from it," Trump tweeted.
While he did not mention confederate statutes, but his tweets were apparently referring to the increasing trend in the US to remove statues and monuments related to confederation.
The White supremacists and neo-Nazis held a protest in Charlottesville against the removal of the statues, which was opposed by an equally strong protest from the other side, resulting in deadly violence over the weekend.
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Trump has blamed both sides, resulting in hue and cry from his political opponents.
Across the country, there has been increasing demand to remove confederate statues and monuments, the proponent of whom claim that these are symbols of slavery.
"Robert E Lee, Stonewall Jackson - who's next, Washington, Jefferson? So foolish! Also the beauty that is being taken out of our cities, towns and parks will be greatly missed and never able to be comparably replaced!" Trump said.
According to a report released by Southern Poverty Law Center, there are more than 1,500 confederate monuments and status across the country, including several of them inside the US Congress. There are parks, schools and army bases named after confederate leaders and generals.
In a statement, Virginia Governor Terry McAuliffe supported the move to remove all of them.
"As we attempt to heal and learn from the tragic events in Charlottesville, I encourage Virginia's localities and the General Assembly - which are vested with the legal authority - to take down these monuments and relocate them to museums or more appropriate settings," McAuliffe said.
"I hope we can all now agree that these symbols are a barrier to progress, inclusion and equality in Virginia and, while the decision may not be mine to make, I believe the path forward is clear," the Governor added.
Congressman Bennie Thompson has called for permanent removal of all offensive and despicable Confederate imagery from the Capitol. There are about 10 such monuments within the US Capitol. Every State gets to install two statues there.
Officials said it is up to individual states to take a call on that. "Confederate memorabilia have no place in this country and especially not in the US Capitol," he said.