"Pakistan Foreign Office has confirmed that the two Indian clerics have been traced and reached Karachi," a source said in New Delhi.
The confirmation came after External Affairs Minister Sushma Swaraj spoke to Pakistan Prime Minister's Adviser on Foreign Affairs Sartaj Aziz, regarding the case. Aziz is in London currently.
The two missing Indian clerics -- Syed Asif Nizami, the head priest (Sajjadanashin) of Hazrat Nizamuddin Aulia Dargah, and and his nephew Nazim Nizami -- reached Karachi this evening.
Earlier in the day, Pakistani sources had said the two clerics were in the custody of Pakistan's intelligence agency over their alleged links with the Muttahida Qaumi Movement (MQM).
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They were offloaded from Karachi-bound Shaheen Airlines on March 14 at the Allama Iqbal International Airport, Lahore, the Pakistani sources said.
"The personnel of an intelligence took both the clerics into custody after getting them offloaded and shifted them to an undisclosed location for investigation," a source had said.
Pakistan on March 8 to see his sister in Karachi. They arrived in Lahore on March 13.
Foreign Office spokesperson Nafees Zakaria yesterday said Pakistan was "pro-actively pursuing" and have asked all departments concerned to look into the matter.
A senior Pakistani police official said the two clerics were being questioned on their exact whereabouts since March 15 when they went missing.
"The two have shown up today in Nazimabad and have informed the police about their presence in Karachi," SSP police Tariq Jameel said.
Another police official confirmed that the police had studied the CCTV footage at the Karachi airport to confirm if the two clerics came from Lahore or elsewhere.
IG Police of Sindh A D Khawaja had told reporters yesterday that the clerics had not reached Karachi as they had not reported to the special branch.