Central Water Commission sources said that Ganga crossed the danger mark at Phaphamau in Allahabad even as it was flowing above the red level at Ballia and Gazipur.
It was flowing close to the danger mark at other places all along the course from Fatehgarh to Varanasi.
Yamuna was flowing above the danger mark at Hamirpur and Chilla Ghat (Banda) besides crossing the red mark at Naini in Allahabad.
Meanwhile, Budhi Rapti was also flowing near the danger level at Kakarhi (Siddharnagar), they said.
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Met office said moderate to rather heavy rain and thundershowers occurred at few places over the state with heavy showers occurring at isolated places.
Chief amount of rainfall recorded in cms are: Thakurdwara-18; Ankinghat-8; Bahraich-7; Chhatnag-6; Kaimganj, Allahabad, Fursatganj, Bara, Baheri-4 each, Shahabad, Fatehpur, Nagina, Badaun-3 each.