The first-ever public assessment is a response to mounting pressure for more information about lethal US operations overseas. Human rights and other groups quickly complained that the administration undercounted civilian casualties and called on the White House to release far more information.
The report by National Intelligence Director James Clapper said the US conducted 473 counterterror strikes, including those by unmanned drones, between January 2009 and December 2015.
The attacks killed an estimated 2,372 to 2,581 combatants in those seven years, the report said. Between 64 and 116 non- combatants were killed. The administration noted the much higher estimates by non-governmental organisations, which go as high as 900 for the same timeframe.
Senior US officials cited several reasons for the discrepancy, including the government's access to sensitive intelligence that helps it more accurately identify the deceased. Groups that have been tracking US drone operations for years weren't convinced.
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"We're concerned that as more countries gain access to armed drone technology, it's more likely that drones will be used as a first response in conflicts and more likely civilians will pay the price."
The Bureau of Investigative Journalism said the administration's number is a fraction of the 380 to 801 civilian deaths it has tallied.
It records such deaths on the basis local and international journalists' reports, advocacy organizations, leaked government documents, court papers and field investigations.