In her new book, she also says that had Aurangzeb's reign been 20 years shorter, he would have been judged differently by modern historians.
Truschke, an assistant professor of South Asian history at Rutgers University in Newark and an avid follower of Mughal history, New Jersey, has now come up with a new biography on Aurangzeb.
"Aurangzeb: The Man and The Myth", published by Penguin Random House, takes a fresh look at the controversial Mughal emperor.
"By the same token, from a Mughal perspective, that goodwill could be revoked when specific temples or their associates acted against imperial interests. Accordingly, Emperor Aurangzeb authorised targeted temple destructions and desecrations throughout his rule," she claims.
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"Many modern people view Aurangzeb's orders to harm specific temples as symptomatic of a larger vendetta against Hindus. Such views have roots in colonial-era scholarship, where positing timeless Hindu-Muslim animosity embodied the British strategy of divide and conquer," she writes.
"Most glaringly, Aurangzeb counted thousands of Hindu temples within his domains and yet destroyed, at most, a few dozen. This incongruity makes little sense if we cling to a vision of Aurangzeb as a cartoon bigot driven by a single-minded agenda of ridding India of Hindu places of worship.
"A historically legitimate view of Aurangzeb must explain why he protected Hindu temples more often than he demolished them."
Truschke argues that Aurangzeb followed Islamic law in granting protection to non-Muslim religious leaders and institutions.
Truschke claims state interests constrained religious
freedom in Mughal India, and Aurangzeb did not hesitate to strike hard against religious institutions and leaders that he deemed seditious or immoral.
"But in the absence of such concerns, Aurangzeb's vision of himself as an even-handed ruler of all Indians prompted him to extend state security to temples."
She says Aurangzeb had 49 years to make good on his princely promise of cultivating religious tolerance in the Mughal Empire, and he got off to a strong start.
Truschke claims that political events incited Aurangzeb to initiate assaults on certain Hindu temples.
She also argues that if Aurangzeb's reign had been 20 years shorter, closer to that of Jahangir (who ruled for 22 years) or Shah Jahan (who ruled for 30 years), modern historians would judge him rather differently.
"But Aurangzeb's later decades of fettering his sons, depending on an increasingly bloated administration, and undertaking ill-advised warring are a hefty part of his tangled legacy. Thus, we are left with a mixed assessment of a complex man and monarch who was plagued by an unbridgeable gap between his lofty ambitions and the realities of Mughal India," she writes.