Naidu arrived here with his family members last night and stayed at a heavily guarded Tirumala Tirupati Devasthanams (TTD) guest house on the hills.
On his arrival at the shrine, he was accorded a warm welcome and conducted to the the sanctum sanctorum of the shrine by TTD Executive Officer AK Singhal and other top officials.
He was in the shrine for about 20 minutes, temple sources told PTI.
After worshipping at the Sri Ranganayaka Mandapam, the vice president-elect was honoured with the sacred silk cloth and holy prasadams by the management of the shrine.
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"After getting elected to the august post, I must be totally independent to maintain the dignity and decorum of the institution and do my responsibilities as per the constitution," he said.
"I am going to begin a new chapter in my life as the vice president of India, which is totally apolitical," he added.
He Later took part in a function at the Sri Venkateswara Institute of Medical Sciences here.