The Indian Institutes of Management Bill, 2017, provides for giving statutory powers to these institutions in their running including appointment of directors, faculty members, and gives them powers to award degrees instead of post graduate diplomas.
The bill also has provisions for appointment of members of the board of governors (BoG) in each of the 20 IIMs through a transparent process, while limiting even the HRD Minister's role.
Moving the bill for consideration and passage, Javadekar said the aim of the bill is to remove the government's interference in IIMs.
He said the proposed legislation will usher in a new era of freedom in the IIMs and these institutes will not require to come to the government for various permissions and clearances.
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"It is a historical bill which will bring a new era in management education in the country," he said, noting that financial transaction will be subject to CAG evaluation as the institutes run on tax payers' money.
The government will have only one representative in each BoG so that the institutes can take decisions independently, the minister said.
Participating in the debate on the bill, Congress leader Shashi Tharoor said it was a "remarkable moment when a minister surrenders (his) powers".
He said other ministers in the government should draw inspiration from Javadekar in doing so.
At the same time, the former minister criticised the government for not enhancing financial assistance to IITs and IIMs, saying they are reeling under funds crunch.
He also pitched for clarity in having reservation in recruitment of faculty staff from SC and ST community.
Tharoor also slammed the government for removing the name of Rajiv Gandhi from the name of the Shillong IIM, saying it is "petty" of the government to stoop to such level.
Trinamool Congress leader Sougata Roy also praised the government for bringing the bill, saying it will further improve the functioning of the IIMs.
He said the fees in the IIMs were very high and urged the government to see that this does not deter the deserving students from admission.
He sought to know from the government why it had appointed directors on the Boards of 10 IIMs on February 10, 2017, just a day after the IIM Bill was tabled in Parliament.
Nagendra Kumar Pradhan (BJD) said the IIMs charge fees between Rs 9 lakh and Rs 20 lakh and because of the limited number of seats these institutes have, students have to opt for private MBA institutes.
Pradhan sought to know from the government if it was aware of the fate of the students who pass out from the 5,500 private business schools and get paid a salary of as low as Rs 10,000 per month and are unable to repay the education loan.
He sought the minister's attention towards private institutions demanding money from students at the time of admission.
B Ravindra Babu (TDP) too appreciated the HRD minister, saying the MPs in the House feel he is a "dynamic minister" and has been very liberal towards giving institutes of national importance to the bifurcated Andhra Pradesh.
BJP's Poonam Mahajan, praising the government, said effort must always be to ensure that the "wings of aspirations of the youth are not cut".
"Aspirations of the youth are country's hope. If the youth aspire, then only can we hope for a better tomorrow. It is a freedom movement for the IIMs. It is about freedom to think and pursue the goals by the youths," she said.