Global warming will boost the frequency at which exceptional floods occur in these regions, while eastern Europe, parts of Scandinavia, Chile and Argentina will have fewer such events, it suggests.
The estimates are based on 11 models for greenhouse-gas emissions and their impact on 29 river basins by 2100.
At the extreme end of the estimate range -- if temperatures rise by four or five degrees Celsius -- a flood event that statistically occurred only once every one hundred years in the 20th century could return every 10 to 50 years in the most vulnerable locations.
The "return period" of once-a-century floods reduces if warming levels by 2100 are lower, though.
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The study, published in the journal Nature Climate Change, is led by Yukiko Hirabayashi of the University of Tokyo.
It is one of the most ambitious attempts to finetune estimates on where flooding will occur in a warmer world. Previous studies have used only several models, or even just one, which means the range of uncertainty is very wide.
UN members have pledged to limit warming to 2C compared to pre-industrial temperatures.
But the current rise in carbon concentrations is in line with 4C or 5C by 2100, a figure that many scientists say would be catastrophic for biodiversity and for hundreds of millions exposed to hunger, extreme weather or sea-level rise.