Asserting that madrasas have done a lot of good work in the country and it was important that these are treated as educational institutions, he said his ministry will look into a possibility of including these Islamic-learning centres in the mainstream educational system under RTE.
Naqvi's comments come after the Maharashtra government asserted that madrasas not teaching subjects like Maths, English and Science would be considered as non-schools.
He, however, emphasised that despite of this, he believed madrasas should be brought in the category of educational institutions and those which are not able to impart mainstream education, should be encouraged to do so.
"There are lakhs and thousands of madrasas, they should be brought within the categorisation of educational institutions or else they will move further from the mainstream," he said.
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"We are working in this direction. The role of madrasas has been good. We are not talking of any madrasas being run by people like bin Laden, but in India whether it is al Qaeda or ISIS have always been rejected by Indian Muslims," he said.
He has still assured that in spite of the provisions, the state government would still provide support to madrasas.