"To jeopardise the food security of millions at the altar of a mere anomaly in the rules is unacceptable," India said in the two-day General Council meeting that concluded in Geneva.
With India taking a strong stand, it will now be difficult for the developed nations to push their agenda of implementing the Trade Facilitation Agreement (TFA).
With this deadlock, the WTO will miss another deadline to implement a pact. The world trade body is scheduled to ratify the TFA till July 31.
Regretting that in the last seven months no progress has been made on the public stock-holding for food security purposes, India said: "We do not have the required confidence and trust that there will be constructive engagement on issues that impact the livelihood of a very significant part of the global population."
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The current WTO norms limit the value of food subsidies at 10 per cent of the total value of food grain production. However, the support is calculated at the prices that are over two-decade old and not at current prices.
India is asking for a change in the base year (1986) for calculating the food subsidies. The US gives about USD 120 billion as agriculture subsidy as compared to India's USD 12 billion.
The final protocol for the TFA, which is dear to the developed world, including the US and Australia, was concluded by the WTO members, but no single meeting has happened on India's food security related issues.