SpiceJet's morning departures were cancelled over payment issues to Oil Marketing Companies (OMCs).
Sources said the airline's departures in Mumbai, Hyderabad and Delhi were impacted because of the issue. Five departures from Mumbai were cancelled.
"There was some temporary operational issue. Flights have now resumed," a SpiceJet spokesperson said in response to a query.
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Spicejet Chief Operating Officer Sanjiv Kapoor and group Chief Financial Officer S L Narayanan met Civil Aviation Ministry officials seeking help to avert the crisis.